Read-Level Error Characterization of Rolling-Circle Amplification-Based Nanopore Sequencing of the Circular DNA Virome
Viruses 2026doi:10.3390/v18070704
Publications
Peer-reviewed papers and preprints on viral diversity, transmission networks and computational methods, newest first.
2026
Systematic Review of Preferences for Preexposure Prophylaxis Among Persons Assigned Male at Birth in the United States
Journal of the Association of Nurses in AIDS Care 2026doi:10.1097/JNC.0000000000000655
Systematic Development of Discrete Choice Experiment Attributes to Assess PrEP Preferences Among MSM and Transgender Women in Baltimore: A Qualitative Study
Journal of the Association of Nurses in AIDS Care 2026doi:10.1097/JNC.0000000000000653
Geometric deep learning enables high-fidelity network imputation for HIV transmission modeling
Communications Medicine 2026doi:10.1038/s43856-026-01640-4
What, how, and when matters: acceptability and preferences for HIV pre-exposure prophylaxis among people who inject drugs in New Delhi, India
AIDS and Behavior 2026doi:10.1007/s10461-026-05114-5
Systematic detection of Oxford Nanopore adapter and barcode contamination in GenBank
BMC Genomics 2026doi:10.1186/s12864-026-12805-9
Single-Cell Hepatitis B Sequencing Reveals Distinct Viral Infection Events Consistent With Superinfection
The Journal of Infectious Diseases 2026doi:10.1093/infdis/jiag181
Barriers and Facilitators Influencing PrEP Uptake Among Men Who Have Sex with Men and Transgender Women in the United States: A Systematic Review
AIDS and Behavior 2026doi:10.1007/s10461-026-05092-8
Evaluating spatially targeted HIV interventions and harm reduction services among people who inject drugs in a high-burden setting
Nature Communications 2026doi:10.1038/s41467-026-69874-3
2025
2024
Network-based strategies to combat HCV: Examining social and spatial drivers of transmission among PWID in New Delhi
Journal of Viral Hepatitis 2024doi:10.1111/jvh.13960
Long-Read Nanopore-Based Sequencing of Anelloviruses
Viruses 2024doi:10.3390/v16050723
Need for informed providers: exploring LA-PrEP access in focus groups with PrEP-indicated communities in Baltimore, Maryland
BMC Public Health 2024doi:10.1186/s12889-024-18595-7
A hepatitis B virus (HBV) sequence variation graph improves alignment and sample-specific consensus sequence construction
PLOS ONE 2024doi:10.1371/journal.pone.0301069
Injection network drivers of HIV prevention service utilization among people who inject drugs: results of a community-based sociometric network cohort in New Delhi, India
Journal of the International AIDS Society 2024doi:10.1002/jia2.26241
Network centrality and HIV prevention service use among people who inject drugs: Findings from a sociometric network cohort in New Delhi, India
Addiction 2024doi:10.1111/add.16379
2023
2022
Deep learning and social network analysis elucidate drivers of HIV transmission in a high-incidence cohort of people who inject drugs
Science Advances 2022doi:10.1126/sciadv.abf0158
Antiretroviral Drug Resistance in HIV Sequences From People Who Inject Drugs and Men Who Have Sex With Men Across 21 Cities in India
Open Forum Infectious Diseases 2022doi:10.1093/ofid/ofac481
Analysis of antibody binding specificities in twin and SNP-genotyped cohorts reveals that antiviral antibody epitope selection is a heritable trait
Immunity 2022doi:10.1016/j.immuni.2021.12.004
Improvements in Severe Acute Respiratory Syndrome Coronavirus 2 Testing Cascade in the United States: Data From Serial Cross-sectional Assessments
Clinical Infectious Diseases 2022doi:10.1093/cid/ciab683
2021
Holiday gatherings, mobility and SARS-CoV-2 transmission: results from 10 US states following Thanksgiving
Scientific Reports 2021doi:10.1038/s41598-021-96779-6
Role of direct and indirect social and spatial ties in the diffusion of HIV and HCV among people who inject drugs: a cross-sectional community-based network analysis in New Delhi, India
eLife 2021doi:10.7554/eLife.69174
Spatiotemporal Phylodynamics of Hepatitis C Among People Who Inject Drugs in India
Hepatology 2021doi:10.1002/hep.31912
Rapid Real-time Tracking of Nonpharmaceutical Interventions and Their Association With Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Positivity: The Coronavirus Disease 2019 (COVID-19) Pandemic Pulse Study
Clinical Infectious Diseases 2021doi:10.1093/cid/ciaa1313
The Immunoglobulin M-Shed Acute Phase Antigen (SAPA)-test for the Early Diagnosis of Congenital Chagas Disease in the Time of the Elimination Goal of Mother-to-Child Transmission
Clinical Infectious Diseases 2021doi:10.1093/cid/ciaa986
2020
2018
2017
Genetic variability of Taenia solium cysticerci recovered from experimentally infected pigs and from naturally infected pigs using microsatellite markers
PLOS Neglected Tropical Diseases 2017doi:10.1371/journal.pntd.0006087
Association of caspase-1 polymorphisms with Chagas cardiomyopathy among individuals in Santa Cruz, Bolivia
Revista da Sociedade Brasileira de Medicina Tropical 2017doi:10.1590/0037-8682-0015-2017
SLC25A46 Mutations Associated with Autosomal Recessive Cerebellar Ataxia in North African Families
Neurodegenerative Diseases 2017doi:10.1159/000464445
2016
Preprints
Stigma, Place, and HIV: The Legacy of the 1984 Bhopal Gas Disaster Among Indian Men Who Have Sex with Men
medRxiv 2026doi:10.64898/2026.10.31.26366861
Assembly of minimally fragmented metagenomic pangenome graphs
bioRxiv 2026doi:10.64898/2026.10.29.762972
Adaptive forecasting of antiretroviral therapy demand using machine learning in India’s national HIV programme
medRxiv 2026doi:10.64898/2026.08.25.26361170
Imprecise assessment of mask use may obscure associations with SARS-CoV-2 positivity
medRxiv 2021doi:10.1101/2020.12.30.20249033
SARS-CoV-2 Testing in Florida, Illinois, and Maryland: Access and Barriers
medRxiv 2020doi:10.1101/2020.12.23.20248789